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Class mesquite.lib.MesquiteProject 

mesquite.lib.MesquiteProject
public class MesquiteProject
extends java.lang.Object
implements mesquite.lib.Listable, mesquite.lib.Commandable, mesquite.lib.HNode
An object of this class represents a collection of information (data matrices, tree blocks, etc.) that may reside in more than one file (MesquiteFile, which represents files on disk or at a URL). More than one project can be open at once. Information from different projects generally doesn't interact (e.g., a data matrix from one project can't belong to a set of taxa from another project), but within a single project information can interact regardless of what file the information belongs to.

Although more than one file can belong to the project, the first file opened is treated as the "home file". In the future the idea of a "project" may be made stronger, and a separate sort of file (the project file) may be created. tHis would eliminate the need for a "home file".

Variable Index

o activeWindowOfProject
o charModels
Character models belonging to the project.
o datas
Vector of data sets (including matrix) within the project.
o developing
o exportCommand
o getInfoCommand
o isDoomed
o newLinkFileCommand
o nexusBlocks
Nexus blocks belonging to the files in the project.
o otherElements
Other file elements belonging to the project.
o ownerModule
The file coordinator module that owns this object
o projectColor
Background color scheme for project's windows
o taxas
A vector of the sets of taxa within the project.
o totalCreated
o totalDisposed
o totalFinalized
o windowToActivate

Constructor Index

o MesquiteProject(FileCoordinator)

Method Index

o addFile(MesquiteFile)
add a file to list of currently linked files
o addFileElement(FileElement)
Adds the passed element to the project.
o addNexusBlock(NexusBlock)
Adds the passed NEXUS block to the project.
o chooseData(Frame, MesquiteFile, Taxa, Object, String, CommandRecord)
o chooseData(Frame, Taxa, Object, CommandRecord)
o chooseData(Frame, Taxa, Object, String, CommandRecord)
o chooseFile(CommandRecord, String)
Select one of the currently linked files; selects first if only one or if scripting.
o chooseTaxa(Frame, String, CommandRecord)
o dispose()
Disposes of the components of the project.
o doCommand(String, String, CommandRecord, CommandChecker)
Here as a placeholder; doesn't do anything at the moment.
o fileSaved(MesquiteFile)
Sets elements of file as not dirty (i.e.
o finalize()
o getCentralModelListener()
o getCharacterData(MesquiteFile, String)
gets the data set of given reference string (ref.
o getCharacterData(MesquiteFile, Taxa, Object, String)
gets the data set of given reference string (ref.
o getCharacterData(MesquiteFile, Taxa, String)
gets the data set of given reference string (ref.
o getCharacterData(String)
gets the data set of given reference string (ref.
o getCharacterMatrices()
returns jth data set in file
o getCharacterMatrix(int)
returns jth data set in file
o getCharacterMatrix(int, Object)
returns the jth data set for given CharacterState subclass.
o getCharacterMatrix(MesquiteFile, int)
returns the jth of data sets belonging to a given file
o getCharacterMatrix(MesquiteFile, Taxa, Object, int)
returns the jth of data sets belonging to a given file
o getCharacterMatrix(Taxa, int)
returns the jth data set belonging to given taxa.
o getCharacterMatrix(Taxa, int, Object)
returns the jth data set belonging to given taxa for given CharacterState subclass.
o getCharacterModel(Class, boolean, int)
returns the index'th character model that is a subclass of c.
o getCharacterModel(Class, int)
returns the index'th character model that is a subclass of c.
o getCharacterModel(int)
returns the index'th character model.
o getCharacterModel(ModelCompatibilityInfo, int)
returns the index'th character model that is a subclass of c.
o getCharacterModel(String)
returns the character model with the given name
o getCharacterModels()
returns the vector of stored character models
o getCharacterModels(Class, Class)
returns a vector of stored character models that are subclasses of the given class
o getCharacterModels(ModelCompatibilityInfo, Class)
returns a vector of stored character models that are compatible with the passed information
o getCharMatrixReference(CharacterData)
returns a string that can be used to refer to taxa block
o getCloseCommand()
returns command to close a file
o getCloseFilesCommand()
returns command to close project (linked files)
o getCompatibleFileElements(Class, Object)
Returns a vector of FileElements that are of the given class or are of its subclasses, and which are compatible with the passed object.
o getCoordinatorModule()
returns the file coordinator module in charge of the project
o getDifferentButCompatibleMatrix(CharacterData, CommandRecord, String, String)
returns a data matrix that is of the same class as that passed, but is a different one.
o getFile(int)
returns a currently linked file
o getFile(String)
returns a currently linked file
o getFileByID(int)
returns a currently linked file
o getFileElement(Class, int)
Returns the ith FileElement that is a subclass of the given class.
o getFileElementNumber(FileElement, Class)
Returns the index position of the FileElement among others of its the subclass c.
o getFileElements(Class)
Returns a vector of FileElements that are of the given class or are of its subclasses.
o getFileNumber(MesquiteFile)
returns the index of a currently linked file
o getFiles()
returns currently linked files
o getHColor()
o getHDaughters()
for HNode interface
o getHImage()
o getHMother()
for HNode interface
o getHomeDirectoryName()
Returns name of directory of home file.
o getHomeFile()
DOCUMENT
o getHomeFileName()
Returns name of home file.
o getHomeURL()
DOCUMENT
o getHShow()
o getID()
instantiations of projects are numbered sequentially so they can be referred to by number
o getIncludeFileCommand()
returns command to incorporate file
o getIncludeURLCommand()
returns command to incorporate file
o getLinkFileCommand()
returns command to link file
o getLinkURLCommand()
returns command to link file
o getMatrixNumber(CharacterData)
gets the number (index position) of the data set.
o getMatrixNumber(MesquiteFile, CharacterData)
gets the number (index position) of the data set.
o getMatrixNumber(String)
gets the number (index position) of the data set of given name.
o getName()
Returns the name of the project.
o getNewLinkFileCommand()
returns command to make new linked file
o getNexusBlocks()
Returns the ListableVector of NEXUS blocks in the project.
o getNexusBlocks(Class, MesquiteFile)
Returns an array of NEXUS blocks of the given type and belonging to the given file.
o getNexusBlocks(String)
Returns an array of NEXUS blocks of the given type name.
o getNumberCharMatrices()
returns number of data sets in file
o getNumberCharMatrices(MesquiteFile)
returns number of data sets belonging to a given file
o getNumberCharMatrices(MesquiteFile, Taxa, Object)
returns number of data sets of a given data class (CharacterState subclass is passed) belonging to given taxa
o getNumberCharMatrices(Object)
returns number of data sets of a given data class (CharacterState subclass is passed)
o getNumberCharMatrices(Taxa)
returns number of data sets belonging to given taxa
o getNumberCharMatrices(Taxa, Object)
returns number of data sets of a given data class (CharacterState subclass is passed) belonging to given taxa
o getNumberLinkedFiles()
returns number of currently linked files
o getNumberOfFileElements(Class)
Returns the number of FileElements that are subclasses of the given class.
o getNumberTaxas()
returns the number of Taxa objects stored in project
o getNumberTaxas(MesquiteFile)
returns the number of Taxa objects stored in project belonging to a file
o getNumModels()
returns the number of character models stored
o getNumSupplements()
for HNode interface
o getProjectColor()
Returns the background color scheme for the project's windows.
o getSaveAsCommand()
returns command to save as
o getSaveCommand()
returns command to save a file
o getSaveFilesCommand()
returns command to save project (linked files)
o getSaveLinkagesCommand()
returns command to save as project (linked files)
o getSupplementName(int)
for HNode interface
o getTaxa(int)
returns the Taxa of given number
o getTaxa(MesquiteFile, int)
returns the Taxa of given number belonging to given file
o getTaxa(MesquiteFile, String)
returns the Taxa of given reference, name or number (as indicated by string passed)
o getTaxa(String)
returns the Taxa of given name
o getTaxaNumber(MesquiteFile, Taxa)
returns the number (index position) of the Taxa
o getTaxaNumber(String)
returns the number (index position) of the Taxa of given name
o getTaxaNumber(Taxa)
returns the number (index position) of the Taxa
o getTaxaReference(Taxa)
returns a string that can be used to refer to taxa block
o getTaxas()
returns the list of Taxa
o getTypeName()
for HNode interface
o getWhichCharacterModel(ModelCompatibilityInfo, CharacterModel)
returns the index of the passed character model among compatible models.
o hNodeAction(Container, int, int, int)
for HNode interface
o hSupplementTouched(int)
for HNode interface
o isDirty()
returns whether any files are dirty
o mergeFile(MesquiteFile)
Puts all file elements belonging to passed file into home file, and gets rid of record of file.
o removeFile(MesquiteFile)
remove a file from list of currently linked files
o removeFileElement(FileElement)
DOCUMENT
o removeNexusBlock(NexusBlock)
Removes the passed NEXUS block from the project.
o removeNexusBlocks(MesquiteFile)
Returns those NEXUS blocks belonging to the given file.
o setHomeFile(MesquiteFile)
DOCUMENT

Variables

o taxas 
 public mesquite.lib.ListableVector taxas
A vector of the sets of taxa within the project.

o datas 
 public mesquite.lib.ListableVector datas
Vector of data sets (including matrix) within the project.

o charModels 
 protected mesquite.lib.characters.ModelVector charModels
Character models belonging to the project.

o otherElements 
 protected mesquite.lib.ListableVector otherElements
Other file elements belonging to the project.

o nexusBlocks 
 protected mesquite.lib.ListableVector nexusBlocks
Nexus blocks belonging to the files in the project.

o windowToActivate 
 public mesquite.lib.MesquiteWindow windowToActivate
o activeWindowOfProject 
 public mesquite.lib.MesquiteWindow activeWindowOfProject
o exportCommand 
 public mesquite.lib.MesquiteCommand exportCommand
o newLinkFileCommand 
 public mesquite.lib.MesquiteCommand newLinkFileCommand
o getInfoCommand 
 public mesquite.lib.MesquiteCommand getInfoCommand
o ownerModule 
 public mesquite.lib.duties.FileCoordinator ownerModule
The file coordinator module that owns this object

o projectColor 
 public int projectColor
Background color scheme for project's windows

o totalCreated 
 public static int totalCreated
o totalDisposed 
 public static int totalDisposed
o totalFinalized 
 public static int totalFinalized
o developing 
 public boolean developing
o isDoomed 
 public boolean isDoomed

Constructors

o MesquiteProject 
 public MesquiteProject(mesquite.lib.duties.FileCoordinator ownerModule)

Methods

o getID 
 public long getID()
instantiations of projects are numbered sequentially so they can be referred to by number

o dispose 
 public void dispose()
Disposes of the components of the project.

o finalize 
 public void finalize() throws java.lang.Throwable
o isDirty 
 public boolean isDirty()
returns whether any files are dirty

o doCommand 
 public java.lang.Object doCommand(java.lang.String commandName,
                                   java.lang.String arguments,
                                   mesquite.lib.CommandRecord commandRec,
                                   mesquite.lib.CommandChecker checker)
Here as a placeholder; doesn't do anything at the moment.

o getProjectColor 
 public int getProjectColor()
Returns the background color scheme for the project's windows. This is 0, unless multiple projects are open simultaneously, in which case other colors are used as well (to distinguish windows belonging to different projects).

o getHomeDirectoryName 
 public java.lang.String getHomeDirectoryName()
Returns name of directory of home file.

o getHomeFileName 
 public java.lang.String getHomeFileName()
Returns name of home file.

o getName 
 public java.lang.String getName()
Returns the name of the project. Currently (temporarily?), the name is based upon the name of the home file.

o getHomeURL 
 public java.net.URL getHomeURL()
DOCUMENT

o setHomeFile 
 public void setHomeFile(mesquite.lib.MesquiteFile file)
DOCUMENT

o getHomeFile 
 public mesquite.lib.MesquiteFile getHomeFile()
DOCUMENT

o addFile 
 public void addFile(mesquite.lib.MesquiteFile file)
add a file to list of currently linked files

o removeFile 
 public void removeFile(mesquite.lib.MesquiteFile file)
remove a file from list of currently linked files

o mergeFile 
 public void mergeFile(mesquite.lib.MesquiteFile file)
Puts all file elements belonging to passed file into home file, and gets rid of record of file.

o getNumberLinkedFiles 
 public int getNumberLinkedFiles()
returns number of currently linked files

o getFileNumber 
 public int getFileNumber(mesquite.lib.MesquiteFile f)
returns the index of a currently linked file

o getFile 
 public mesquite.lib.MesquiteFile getFile(java.lang.String name)
returns a currently linked file

o getFile 
 public mesquite.lib.MesquiteFile getFile(int num)
returns a currently linked file

o getFileByID 
 public mesquite.lib.MesquiteFile getFileByID(int id)
returns a currently linked file

o getFiles 
 public mesquite.lib.ListableVector getFiles()
returns currently linked files

o chooseFile 
 public mesquite.lib.MesquiteFile chooseFile(mesquite.lib.CommandRecord commandRec,
                                             java.lang.String message)
Select one of the currently linked files; selects first if only one or if scripting. 12 Jan 02

o getCloseCommand 
 public mesquite.lib.MesquiteCommand getCloseCommand()
returns command to close a file

o getCloseFilesCommand 
 public mesquite.lib.MesquiteCommand getCloseFilesCommand()
returns command to close project (linked files)

o getSaveCommand 
 public mesquite.lib.MesquiteCommand getSaveCommand()
returns command to save a file

o getSaveFilesCommand 
 public mesquite.lib.MesquiteCommand getSaveFilesCommand()
returns command to save project (linked files)

o getLinkFileCommand 
 public mesquite.lib.MesquiteCommand getLinkFileCommand()
returns command to link file

o getNewLinkFileCommand 
 public mesquite.lib.MesquiteCommand getNewLinkFileCommand()
returns command to make new linked file

o getLinkURLCommand 
 public mesquite.lib.MesquiteCommand getLinkURLCommand()
returns command to link file

o getIncludeFileCommand 
 public mesquite.lib.MesquiteCommand getIncludeFileCommand()
returns command to incorporate file

o getIncludeURLCommand 
 public mesquite.lib.MesquiteCommand getIncludeURLCommand()
returns command to incorporate file

o getSaveAsCommand 
 public mesquite.lib.MesquiteCommand getSaveAsCommand()
returns command to save as

o getSaveLinkagesCommand 
 public mesquite.lib.MesquiteCommand getSaveLinkagesCommand()
returns command to save as project (linked files)

o getCoordinatorModule 
 public mesquite.lib.duties.FileCoordinator getCoordinatorModule()
returns the file coordinator module in charge of the project

o addFileElement 
 public void addFileElement(mesquite.lib.FileElement element)
Adds the passed element to the project.

o removeFileElement 
 public void removeFileElement(mesquite.lib.FileElement element)
DOCUMENT

o getNumberOfFileElements 
 public int getNumberOfFileElements(java.lang.Class c)
Returns the number of FileElements that are subclasses of the given class.

o fileSaved 
 public void fileSaved(mesquite.lib.MesquiteFile f)
Sets elements of file as not dirty (i.e. saved).

o getFileElements 
 public mesquite.lib.Listable[] getFileElements(java.lang.Class c)
Returns a vector of FileElements that are of the given class or are of its subclasses.

o getCompatibleFileElements 
 public mesquite.lib.Listable[] getCompatibleFileElements(java.lang.Class c,
                                                          java.lang.Object condition)
Returns a vector of FileElements that are of the given class or are of its subclasses, and which are compatible with the passed object.

o getFileElement 
 public mesquite.lib.FileElement getFileElement(java.lang.Class c,
                                                int i)
Returns the ith FileElement that is a subclass of the given class.

o getFileElementNumber 
 public int getFileElementNumber(mesquite.lib.FileElement f,
                                 java.lang.Class c)
Returns the index position of the FileElement among others of its the subclass c.

o addNexusBlock 
 public void addNexusBlock(mesquite.lib.NexusBlock block)
Adds the passed NEXUS block to the project.

o removeNexusBlock 
 public void removeNexusBlock(mesquite.lib.NexusBlock block)
Removes the passed NEXUS block from the project.

o removeNexusBlocks 
 public void removeNexusBlocks(mesquite.lib.MesquiteFile f)
Returns those NEXUS blocks belonging to the given file.

o getNexusBlocks 
 public mesquite.lib.NexusBlock[] getNexusBlocks(java.lang.Class c,
                                                 mesquite.lib.MesquiteFile f)
Returns an array of NEXUS blocks of the given type and belonging to the given file.

o getNexusBlocks 
 public mesquite.lib.NexusBlock[] getNexusBlocks(java.lang.String typeName)
Returns an array of NEXUS blocks of the given type name. 12 Jan 02

o getNexusBlocks 
 public mesquite.lib.ListableVector getNexusBlocks()
Returns the ListableVector of NEXUS blocks in the project.

o getTaxas 
 public mesquite.lib.ListableVector getTaxas()
returns the list of Taxa

o getTaxa 
 public mesquite.lib.Taxa getTaxa(int taxaNumber)
returns the Taxa of given number

o getTaxa 
 public mesquite.lib.Taxa getTaxa(java.lang.String name)
returns the Taxa of given name

o getTaxa 
 public mesquite.lib.Taxa getTaxa(mesquite.lib.MesquiteFile f,
                                  java.lang.String ref)
returns the Taxa of given reference, name or number (as indicated by string passed)

o getTaxa 
 public mesquite.lib.Taxa getTaxa(mesquite.lib.MesquiteFile f,
                                  int taxaNumber)
returns the Taxa of given number belonging to given file

o getTaxaNumber 
 public int getTaxaNumber(java.lang.String name)
returns the number (index position) of the Taxa of given name

o getTaxaNumber 
 public int getTaxaNumber(mesquite.lib.MesquiteFile file,
                          mesquite.lib.Taxa taxa)
returns the number (index position) of the Taxa

o getTaxaNumber 
 public int getTaxaNumber(mesquite.lib.Taxa taxa)
returns the number (index position) of the Taxa

o getTaxaReference 
 public java.lang.String getTaxaReference(mesquite.lib.Taxa taxa)
returns a string that can be used to refer to taxa block

o chooseTaxa 
 public mesquite.lib.Taxa chooseTaxa(java.awt.Frame frame,
                                     java.lang.String message,
                                     mesquite.lib.CommandRecord commandRec)
o getNumberTaxas 
 public int getNumberTaxas(mesquite.lib.MesquiteFile f)
returns the number of Taxa objects stored in project belonging to a file

o getNumberTaxas 
 public int getNumberTaxas()
returns the number of Taxa objects stored in project

o getCharacterMatrices 
 public mesquite.lib.ListableVector getCharacterMatrices()
returns jth data set in file

o getCharacterMatrix 
 public mesquite.lib.characters.CharacterData getCharacterMatrix(int j)
returns jth data set in file

o getCharacterMatrix 
 public mesquite.lib.characters.CharacterData getCharacterMatrix(mesquite.lib.Taxa taxa,
                                                                 int j)
returns the jth data set belonging to given taxa.

o getCharacterMatrix 
 public mesquite.lib.characters.CharacterData getCharacterMatrix(int j,
                                                                 java.lang.Object dataClass)
returns the jth data set for given CharacterState subclass.

o getCharacterMatrix 
 public mesquite.lib.characters.CharacterData getCharacterMatrix(mesquite.lib.Taxa taxa,
                                                                 int j,
                                                                 java.lang.Object dataClass)
returns the jth data set belonging to given taxa for given CharacterState subclass.

o getCharacterMatrix 
 public mesquite.lib.characters.CharacterData getCharacterMatrix(mesquite.lib.MesquiteFile f,
                                                                 int j)
returns the jth of data sets belonging to a given file

o getCharacterMatrix 
 public mesquite.lib.characters.CharacterData getCharacterMatrix(mesquite.lib.MesquiteFile f,
                                                                 mesquite.lib.Taxa taxa,
                                                                 java.lang.Object dataClass,
                                                                 int j)
returns the jth of data sets belonging to a given file

o getCharacterData 
 public mesquite.lib.characters.CharacterData getCharacterData(java.lang.String name)
gets the data set of given reference string (ref. number, name, number) from the project

o getCharacterData 
 public mesquite.lib.characters.CharacterData getCharacterData(mesquite.lib.MesquiteFile f,
                                                               java.lang.String ref)
gets the data set of given reference string (ref. number, name, number) from the project

o getCharacterData 
 public mesquite.lib.characters.CharacterData getCharacterData(mesquite.lib.MesquiteFile f,
                                                               mesquite.lib.Taxa taxa,
                                                               java.lang.String ref)
gets the data set of given reference string (ref. number, name, number) from the project

o getCharacterData 
 public mesquite.lib.characters.CharacterData getCharacterData(mesquite.lib.MesquiteFile f,
                                                               mesquite.lib.Taxa taxa,
                                                               java.lang.Object dataClass,
                                                               java.lang.String ref)
gets the data set of given reference string (ref. number, name, number) from the project

o getDifferentButCompatibleMatrix 
 public mesquite.lib.characters.CharacterData getDifferentButCompatibleMatrix(mesquite.lib.characters.CharacterData data,
                                                                              mesquite.lib.CommandRecord commandRec,
                                                                              java.lang.String messageIfNoneFound,
                                                                              java.lang.String messageForChoice)
returns a data matrix that is of the same class as that passed, but is a different one.

o getMatrixNumber 
 public int getMatrixNumber(java.lang.String name)
gets the number (index position) of the data set of given name.

o getMatrixNumber 
 public int getMatrixNumber(mesquite.lib.characters.CharacterData data)
gets the number (index position) of the data set.

o getMatrixNumber 
 public int getMatrixNumber(mesquite.lib.MesquiteFile file,
                            mesquite.lib.characters.CharacterData data)
gets the number (index position) of the data set.

o getCharMatrixReference 
 public java.lang.String getCharMatrixReference(mesquite.lib.characters.CharacterData data)
returns a string that can be used to refer to taxa block

o getNumberCharMatrices 
 public int getNumberCharMatrices()
returns number of data sets in file

o getNumberCharMatrices 
 public int getNumberCharMatrices(mesquite.lib.Taxa taxa)
returns number of data sets belonging to given taxa

o getNumberCharMatrices 
 public int getNumberCharMatrices(mesquite.lib.Taxa taxa,
                                  java.lang.Object dataClass)
returns number of data sets of a given data class (CharacterState subclass is passed) belonging to given taxa

o getNumberCharMatrices 
 public int getNumberCharMatrices(java.lang.Object dataClass)
returns number of data sets of a given data class (CharacterState subclass is passed)

o getNumberCharMatrices 
 public int getNumberCharMatrices(mesquite.lib.MesquiteFile f)
returns number of data sets belonging to a given file

o getNumberCharMatrices 
 public int getNumberCharMatrices(mesquite.lib.MesquiteFile file,
                                  mesquite.lib.Taxa taxa,
                                  java.lang.Object dataClass)
returns number of data sets of a given data class (CharacterState subclass is passed) belonging to given taxa

o chooseData 
 public mesquite.lib.characters.CharacterData chooseData(java.awt.Frame frame,
                                                         mesquite.lib.Taxa taxa,
                                                         java.lang.Object dataClass,
                                                         mesquite.lib.CommandRecord commandRec)
o chooseData 
 public mesquite.lib.characters.CharacterData chooseData(java.awt.Frame frame,
                                                         mesquite.lib.Taxa taxa,
                                                         java.lang.Object dataClass,
                                                         java.lang.String message,
                                                         mesquite.lib.CommandRecord commandRec)
o chooseData 
 public mesquite.lib.characters.CharacterData chooseData(java.awt.Frame frame,
                                                         mesquite.lib.MesquiteFile file,
                                                         mesquite.lib.Taxa taxa,
                                                         java.lang.Object dataClass,
                                                         java.lang.String message,
                                                         mesquite.lib.CommandRecord commandRec)
o getCharacterModels 
 public mesquite.lib.characters.ModelVector getCharacterModels()
returns the vector of stored character models

o getNumModels 
 public int getNumModels()
returns the number of character models stored

o getCharacterModels 
 public mesquite.lib.Listable[] getCharacterModels(java.lang.Class c,
                                                   java.lang.Class stateClass)
returns a vector of stored character models that are subclasses of the given class

o getCharacterModels 
 public mesquite.lib.Listable[] getCharacterModels(mesquite.lib.characters.ModelCompatibilityInfo mci,
                                                   java.lang.Class stateClass)
returns a vector of stored character models that are compatible with the passed information

o getCentralModelListener 
 public mesquite.lib.characters.CentralModelListener getCentralModelListener()
o getCharacterModel 
 public mesquite.lib.characters.CharacterModel getCharacterModel(int index)
returns the index'th character model.

o getCharacterModel 
 public mesquite.lib.characters.CharacterModel getCharacterModel(mesquite.lib.characters.ModelCompatibilityInfo mci,
                                                                 int index)
returns the index'th character model that is a subclass of c.

o getWhichCharacterModel 
 public int getWhichCharacterModel(mesquite.lib.characters.ModelCompatibilityInfo mci,
                                   mesquite.lib.characters.CharacterModel model)
returns the index of the passed character model among compatible models. Added Apr 02

o getCharacterModel 
 public mesquite.lib.characters.CharacterModel getCharacterModel(java.lang.Class c,
                                                                 boolean allowBuiltIn,
                                                                 int index)
returns the index'th character model that is a subclass of c.

o getCharacterModel 
 public mesquite.lib.characters.CharacterModel getCharacterModel(java.lang.Class c,
                                                                 int index)
returns the index'th character model that is a subclass of c.

o getCharacterModel 
 public mesquite.lib.characters.CharacterModel getCharacterModel(java.lang.String name)
returns the character model with the given name

o getHDaughters 
 public mesquite.lib.HNode[] getHDaughters()
for HNode interface

o getHMother 
 public mesquite.lib.HNode getHMother()
for HNode interface

o getNumSupplements 
 public int getNumSupplements()
for HNode interface

o getSupplementName 
 public java.lang.String getSupplementName(int index)
for HNode interface

o hNodeAction 
 public void hNodeAction(java.awt.Container c,
                         int x,
                         int y,
                         int action)
for HNode interface

o getTypeName 
 public java.lang.String getTypeName()
for HNode interface

o hSupplementTouched 
 public void hSupplementTouched(int index)
for HNode interface

o getHImage 
 public java.awt.Image getHImage()
o getHColor 
 public java.awt.Color getHColor()
o getHShow 
 public boolean getHShow()

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